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Mouse element [ mm1957 ]


Position: chr13:15,049,095-15,054,050 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAAACTCTAAGCAAGCCTCCAAttaaatgctttttttgtataagcatttcctttgccatg
gtgtcttttcactggaatataacagtaactagaacagttcatgattttatttttatttat
agcaaaatagtgttccatagtgtttatttgccatatttgcactattcatcaaataaccat
cagatgaatggttgttttcatttcctagctattgtgaatagaacatcagtgaacatagct
gagcaagtgtctgtggagtggaatgttgagtcctatggacttatgctaaggagtagaata
gctaagtcatgtgataagaattatttttagcttttggagaattctccacactgaattcca
gagtggctggccagtttgccaccccatcaataatgaatgggttcctttccctctacatcc
cctccagcatttggtgtcaattgtttagctgatctttgccattcggacttagattaaata
ttctctatttggaacaaagacccagtcaacaggtgaaaaataatgcctcatgctagaaaa
ctagccaactatccagggctagtgaagtcatagatcttgaagaacctgcaagtttactaa
actaatacaatccctaactacattctaaatatatgtacttttacccatataagggtagtc
cttatcccacatcaaggaaacttttctttgcaacacttgtatacaatcatagaaaaccat
agccaatcaaaatgaagatttgtggacttcagtcctggtgaatacctctacagaacaagt
cctctacctgatctcagagatcattaaaaagggtggattgaaagagtgtaaaccagagga
taatggagtttgctgtgagattgagtctcctagaaatgtcagaagttaaacccaataaat
tcccatcaatataatttactaaacactagctgaacaaatacaggaataatagtcattcta
atgtggatgagataaacccaatatgctcagtcctatatagagataaataggcaactaagg
aatgctgagagtggagaaagactcttctccagggaagaacaagtcagtcaatgattcaat
gtcaaatggttaaccctaaagccatacatacaattagcactatacagactgagctggttg
tatttattcacttaggattaaacacacatgcacacacacgaaaaattaattaaaacatgg
gccatgaatttgatagagagtaatgagagatataggaatgttgggaagaagaaagagaac
aggggaatgatgtaattataatatcaaaataagaagcaatttagagaataaatataaatc
ctaaagttatatactctaattgaatagtgactctaattatatagttcattgagttatata
gactttgagtgcctttcagtctccatctacaccccagagctaaggctgtcccacagccgt
atgcacacaaatcctacaagaagagagctggtctcctaggtttcctcttattcctaagca
cagaggtgagttcaccattttcactgcaataactgtccaaagcaggacccaccaggaaca
cacagggctcagcctaatacatgtttgctgtcttttatttttttttgccatgtcattatt
ataagttcaaaagtaaaatttacataaaaagtaatatcccagcacttgggaggcagaggc
aggcagatttctgagttcgagttcagcctgctctacaaagtgagttccaggacagccagg
gctatagagaaaccatgtctcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtaatatg
gcatatgaagaatatgactgtgagaaattatcatcctgagtgaggcaacccagacacaaa
agaacacatatgtactcactaataagtgaatattagctgaaatgctcagaatgcccatgg
tacaacccacataccaaatgaagcttaggaagaagaaagaccaaagtgtgggtgcttcaa
tcctacatagaagggagaacaaaataatcacagatggtagagggagggagggatctggca
gggagagaggagggggaagtaaaaaaaggtttcaggatcaggtatgagaagggacaggag
agaaatacaggtcagaaaattggattgaaatatgtagcagtggggcatggggaactgggg
atagcaactagaaagtcccgacaacagggaaggactcaaggacccaatggggatgacttt
agctgaaatacccaaaacaggggagatagagcctgtaaagatcacctccagtagataggc
acagctgccagttgagggatggggccacccacccatctcaaaatttttagccagagttgt
cctgtccaaaggaaagacagggacaaaaaaaaaaaaaaaaaaggatcagagactgaagga
agggccatctagagacagccccaactagggattcatcccagctgcagacaccaaaccttg
gcactattgctgatgacatggagcaattactgataggagacttgtatggctgtcccttga
gaagttctgccagcacctgactaatacagatgcagatacagccatccatcagactgagcc
cagacacctccctggaagagctaggggaagaaggagatgaaggagattgcaacaccatag
gaaaaacaatatcaactaaccaaaccactcagggctcacagggactaaaccacaaaccaa
agactatgtatgcagggatccaggactccagctgcacacatagcagaagatggccttatc
tggcatcaatgggaggggtgccctttgttttgtggaggcttgatacccctagtgtagcag
gatgctagagtggtaaggtgagagtgggtgagtgggtggaggagcaacctcatataggta
aagaggagggggtaagagagggagtttgtggagggaaaatcaggaaggaggatgtcattt
gaaatgtaaacaaataaaatgattaataaaacatatgtgtgttgaagacaattttaaaat
ctagctcatttagattgatatccctgatgttgtgataaaaaattgaccaaacactatttg
ggggaaaagagtttattttatttaacagcttagaaatccatgatgggatctcaagtagag
accatggaagaaaactgtcaaatgttttgatcctactggctttttcagcttgctttatta
tacaactcagaaccacatgcccagggttgacactgcccacagtgtctaggccttaccaca
ttaatcattagtcaagacagctccccttagaataccctaatggctaaaatgatggtggta
atttctcaaataagattcctctttgcagttgagtcaaactaagcaatagcagaagagatg
acagagctactaaaagcactcattagtttcagtgtatctggttttatgtggaggtccttg
attcacttggaattaagctttgcacaggagacaaaaacggatcgatttgcattcttctac
atgttaaccaccaattgaaccagtaccatttgttgaaaatgctgtctttttttccactgg
atggtttcaactcctttgtcaaagatcaagtgaccataggtgtggagggggttcattttt
gggtcttcatttctattctattgatctacctgtttgtcactgtatgaataccatgcagtt
ttttattttttttttatcatgattgctctatagtacagcttgaggtcagagattgtgatt
tccccagaagttcttttattgttgagaatagttttcactgtgggttttgttgttgttgta
attctggatgaatttggaagttgctctttctaactctatgaagaattgatttggaatttt
gatgggaattgcaatgaatctgtagattgctttcagcaagatgaccatttttactatatt
aatactacaaatccatgatcatgggagatctttccatcttctgagatcttcgatttcttt
cttcagagacttgaagatcttgtgatacagatcttccatttgcttagttagagtcatacc
aagatattttatattatttgtatttattgtttccctaatatctttctcaatctgtttacc
ttttgagtagaagaaggctactgattttattgagttaattttatatacaaccactttgct
gaagttgtttattagctttaggagttctctttggggtcacttatgtatatgatcatatca
tctgcaaatagtgatattttgacttctttcaaaattgtatccctttggtctccttttgtt
gtctaattgctctgactaagatttcaattactatattgaacaggtaggaagagagtggag
agccttgtctaatacctgattttagtgggattgatttaagtttatcaccattaagtttga
tgttggctactggtttggtgtatattgcttttactatgtttaggtatgggcctttgattc
ctgttctttccaagacttttaccacaaagggatgttgaattttgtcaaatgctttctcag
catctaatgagaggatcatatgttttttcctttgagtttgtttatatagtgaattacatt
ggtaggtttccatatattgaaacattgctgcatccctgggatgaagcctacttgatcatg
aaggatgaccattttgatgtgatcttggatttggtttgtgagaattttattgagtatttg
catgtatattcataagtgaaattggtctgacattctctttctttgttgggtatgtgtgtg
atctaggtgtaagcataattgtggcttcatagaatgaattgggtagtgttccttcagttt
taattttgtagaataatttgaagagtattggtattaggtcttctttggaggtctgataga
actctgcactaaacccatctggtcctgggcttttgttggttaggaaactattgataactg
cttctgtttttttaGTGGTTATGGGACTGTTTGGAT
Primer
(+)gaaactctaagcaagcctccaa
(+)ATCCAAACAGTCCCATAACCAC


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