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Human element [ hs1787 ]


Position: chr3:148,085,265-148,088,422 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ZIC1 - AGTR1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGAAATGCTCCTCTTTCACTCAgctacacaagatttttcagtaagaattagctgcactaa
ttaattactacctattacttcaaaaataattacttggtgaaagtaaagcaactggtagta
ctatttctactaaccttaaccatcaccagcaggatgaaataattgattttcttttggtgt
tttattgaacaaagattaccttcatactctgtctttggaaaagcagcactgtattaaatc
acatattgtagacttaaaattaaattgcccataaacgtcaatattgccaacagtacagag
tggtaacttattcatgccacttctttaaactcaccacacattaatgtgctaatgtgatgg
aaaataaagaatcatcatgtgccttccaaatgctgctttccctattgtttatatatgtat
tttgtaagtgactagaagactgtttcatcagctaagggatgccttgccaaaagaaatgac
ataatcgttaactaattacaactaaatgatagcatcacacattttgacaggttaacacac
attctattacaagttggaaacttgagaaagagaataataaagctactactcttgcaaaat
cctcaaatgccaatagggaaaataaactctttaaggattttcaccaaccatgtgtttttc
tttttcttcttgccctcattgtacaaaagcaaacaatgtgaagttgagttaacattctaa
actaattcagtaatcaattaacttatttttaccaattttatccaattataaatcagagtc
tacccacattcacagtttaaacatgctgaaatcatcattttgggcccttttcccctttat
cagtgaagcagcaagatacatgtgggctgagatataaaaagaacaaggaaaaccaggaga
ggaaaattggtattttcagatgtaatctagttcattaaaaatccaaaagcaaaacacaaa
gacgtgcctgaaatggcatattaccagaattgtctctgaagagcttctcagtttaactga
aaaaaaaaaattttagaaggattaataaaaaattaaatcatctattttataatttcttac
aaaatgactccaatactataagtagagtgtctcattgttctcaatcaccccatacatatt
ataccaaaattcttcagaaaagaaaaaaaaaatagagagtgctttctaagccctgtcctt
tagaaagtaaataagatgacaattaaagaattgttctccacccttgtaggtactgaagta
tatataagtaagtactacagactgttaaaccccatacaatgtgaccggagaatcactaca
tgtcaagtggcatgcatttaagtatagaatatctagttgttgggttttttcttttagttt
acttattatagcttgtaaaaaattttcccttaattctactgttataaaatttcactagca
aagacgtaaagttggccagtttgctactgctagggtaatgagtaaagagagttggcatat
caaactaaacactgggcaaacacaaaacattggaaatcaattacaatataatataagaag
taagtcatttaagatattttgtccttaagacttgatatggaatgataaaaattttaaatg
actatatattttccttgtgggagaaaactgaatgattacttagcatacaacaaaagagaa
tctaaaaggaaggaatgttaacataagaagatgaaatgagatccatatgttaaagggtga
tattagtatttcaaacccccaaaaaattgtagaaaaaattaaattacttacctttctagt
tcagtacaaatgtcctacagctaattatcatgaaatattgcctggaaattaaccagtcat
gttgtgtttctatctccagatttacaattagtaatgctattaatgtggttcctgtactta
gcgttactaattatattgctatgaactaatggtgttaaaaatagcaatagccatcaacta
ccaattaatgcttaatgagagcatataaaccctggcattgtaatgaatttcaaaattatg
gttgcttgtattccttttgcaatcatgcaaaaatgggtgtaaccagtaaccactgaagta
gggcattgactgaaagcatagttaccacatcattgcaggaaaatcaagagaagaaataaa
tggctccttcaaggaatatatatgtgtccttttaatcttacaattcaacacacagatttt
tggaaagattcttttctagttacgcatataaaaacacagctgaagcatgatttgtaaaga
tgttgtttcaaacctatgaataaaataggacttttttttaaaactttggaagattagttt
ctataaaagaaccagtcaacaaatcatttatcctagaatttacatagggtataatatctc
agaagttcagacataagatagggatattagctaggttaagctgggttatgctacagtaac
aaatacccaccaatggcttaacattcaaaaatttatttcttgtttatggtgtatgtccag
cattgtcacttagggactaatgctcactagttactcaggaacccaggctgaaagagattc
catcttgtcatgtgttttcattacctgcagagggaactgggaaaattgtcttctgtctat
tatttctatccaaaagtgacttatattactttagatgacatttcattgggaaaaaaaaac
aagtcatatgcttgtgtctaagttcaaactgatggagaatgacagcaagaaagagaaaaa
ctagaaaaccaagaaacaactatatatgttttagtactttggcactgttttaatgaccaa
agcaagaagactttctctaaaatggaaaacttcactggggaactgtctggtggtaaggga
atattgaataaacaccaatacatctctctgagtctctggaaatatgttatttgaccttgt
cactaaaaaagccatttcctacaatgggctatgtgtattttcctagtagtacacagaact
gcggtatttatcttttcaacttcaaaaatgtactttaatattttatcttgacagcagcct
tttcatcccttggtctcagtcaaaactatagtgaatttcagaaatagtaaagagtagaag
tcaccatagaatgaggtaAGCAAAGGAGGAGCTTAGCC
Primer
(+)TGAAATGCTCCTCTTTCACTCA
(+)GGCTAAGCTCCTCCTTTGCT


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