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Human element [ hs148 ]


Position: chr2:45,066,752-45,070,624 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR548AD - SIX3-AS1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGTCTCCAAAGAAATACCCactgaggcgcttgggtaccagcctctggcagccttttagc
tcttctcttccatgccttccattttctcctcccctggaaaggcacctgcagccctagcag
aaacgtggaagtcaatttgtgtggctggtgcaagcgttttagcatattgagtggtccaaa
tatttaaatatctatgatataggaagcgtggagaacattaaaaaccattttctccctgct
gattgcaagagaggaaatacacacagtcctgctctcctgcacagttgcaaaactgctggc
ctaatcatattgcctacgtaaagaacctctcccgcctccacgaatctggctttaggttgc
atttactgtaaacaaagatgtatttggggggggcagttggattgagtttattgtttatgt
aaatctctcagaatgtgacatagcaagatagcttcctatgttgtgttgatccacatttta
ggccaacagccagagtattttatcttttccttcattatagtgatcttccaattagccgtg
gtctgtaataccctgattttggtggcagtggtttggacaggattgtttgatagttctgct
cgagaggcaaaataaggggccttattatagaagtgcagaggttgtgcaggagctgagttc
tgttgcaaagtttgccgataaggggaaaaccggcccttaagcgtccattctgttctgtat
attaacacttctaatctgcactgctgataaaactgcaagccatttgcctttggaggaatt
agttctgcctcacttgtgtaaccaggcgatggtgattaacctttaaactgtccaatattc
ccagcagcctcctgctccagattagaaactatttagttatgaccaactaaattaacaaca
ctcccttctctgaagaatgagatttggaaggtggatgcattttaaggtggaattgtgttt
tgaattggtgatccatccttctagggtgtttatttcctcatccttaaagttcaggctgcc
acactgggcatggaaggctcagctggggagtggggaggtaagtagaacgagagggagacc
agttgtcctggttggatttgtagacacaaggttttatgggcacaaaagaaacctgccttg
ggttcagatttccttccttgttatcatcccaggtgaaaaggggacattagctcttctgca
agacccaaaccatgctcacagtgggactgagcagttgttgctaatggggagattaaggaa
taaataaagtagctcccttactcccaatttcttcctggagttgaatgtcaggaaaagagg
cgctaactaactttcatgttccagacatagggatatgcccaccgcaggtgggtctaccca
gttgagctgcagccatgctaacaatcctggttcagccctctcctatctgcccatttcaaa
tgtgtaatttatcagttgaaacataccctcggtggtgagggccaggcaattatgtaatcg
tgtcatgccttaaatccccagattgttggtcctccctggataacaaataaaatggagcag
caatcctcaccaccagtaccccaccaccacccaatgctggtagcgaccttttctgtttta
ccagtttcatattagctacctccttaagaactgctaatctagatactgcattagcaggat
gtcagtcaagccgtagtccacggcaaagccttcttcatataccaatttaaatcattcatg
gtcttttctttggcattattcaaaagatcataataattttcttgtgcccacagcacaaaa
aaatcaattatttccccacaaagacttgaaagtacttagcgagtgcggcaagaaaagctg
agggtgatatcaaattgaaattgcactcattacatacaacacaattagttgccactagcc
tggccgggctttaattctaaatggcatatctttattattacagaaacaagcatgcaaatg
gcattgttcaggatttgccgaaatcaataggatatagtgctgtgtgtttggtggccactg
tcactcacgctgctgtggatgcgagataatgtgtgtgtttgaattaatgaagggagcagg
caacatcataagtgacacccaaataaaagaaatgggtacatgatatttgtaattattcta
cttgtgtttttgttgtaaatacttgtactttttgttttttaatcaaaggattaattgcat
tttaataaggcattatgatttgcagagctttagttaattaaaacttgtagtatataatta
tgaagtgatgctgagattttctaaagatcacctatatgtttagaatatgtataatttttc
tgttaagcagtggcaacctcccctccacccttttttccttggtccctcccccagcaacgg
aagacatggatgacttacgtgaaatgttggtgaattgacaattctaggtggatctctgta
agtgacaaatagaacccaatttaggttattgcacaaactaaaatgattctgaaggagcac
tcatgtgataaactgtagcagaaaactttctccttgacacttgccttgtcgttaatcttc
ctgagatgtagcactatagaagcttggggagttgatgtgagttttagagtgcaaacattg
agattttagacctgggtgaggtgatctcactgagttggaatctaattggttctctgcagc
taggccaaaaccccggtggagtcactgaaccccagcttgtcctctgtgacactcaagagc
ttatttgggaggaatgggatggggagaggggatgctgaaagtcaagggagcttggaattc
cctagtgttaacacattagtaattcacagtggaatccagcccagagatgtgtaattgcgt
ttcctgtaggtgtgtattatgtgaagactgatggattaattgctagatagatggaataga
gctaaggtaaaacattattaaaaagttttaaaatcttaatgtaacattttgaagtttgct
ttggggattatttttcaactcagtctcctactttccattctctctgggatcaggagtggt
agttgtctttgcagaaggaggggtccatttgttgagagcttagtatgtcctttgtgaagg
tcaggtggccctgtgagggcaggtggatgcgggagctaggagctggatctcgtgtggcca
gtgatgtgacgggatgagctgactgcaaaagcctggactccagttaccctttggggtatt
gcctggacaccaagggctaattattccctccctataaacacccagatgctgcaatgagta
gtatcaagaatctcccccaaccccctgcaagacaaagtgaaagatgaagttgaagggaac
atcccacgatgttcatgtcccaagcctggttccctgggatgcccacaacagtgctctaag
tagggtggcccaaagctgatttaaaatctaatactctcaggttggtcatggcttcctact
ttcactctgaaaacctagagcttgaaaaggtggttcattcaaagcttgctaaaatatttg
ctcagcagcacaatggtgtgtgatggaaaataagctcttgtggcttgcttcatcctatca
gccgcggcctgcagcagggaaagaatgaggggaggtcagtcaattatgtgtggtaatcac
cgtaagcatattatctgagacacagatgtcttctatgaccccacacgacatggctattaa
cctcggagcaatataaaaatggagtgggctttgggggaggtgtggaggtaggccagactt
tcaggctagccttgttcacaggctcagaaaaacaagttctggacacgaagactattttca
gaaacccatcCAACAAACTGACCCCGGCTCACT
Primer
(+)CAGTCTCCAAAGAAATACCC
(+)AGTGAGCCGGGGTCAGTTTGTTG


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