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Human element [ hs1252 ]


Position: chr6:10,407,432-10,410,045 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TFAP2A(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCGGCTTCTGACTTTAGCaattccagtgttcaggcagcgaaagccagggaaacacaata
gaaatgacaggggcgggagtaacaggagagtgttggaaaagaaaaggtttaggtagtata
ataaagagcaaacacacacacctttatggaaaactccacataaatttttagaaagactac
tgcctaagcctgggtatgataggaatatgaaaatgaccaaaaccaaaaaacctttgagct
tgctttcctgttgtccaacagcaggtttgttgttagtgtggggtgtttttctttttcttt
tcttttttttttttttttttacagatggatgggtatacgtgtgcgcactagagtcaaaac
gtgattagaaagtaaaatgaagtcatgttttctaatgcagaaactgacaggcaatataat
gtctggctgtgtttacaaattagcaccagggctgctgagatagaagattttgcaatcatt
accaaacacaggcattaccatttaaaaaactattgcttccttctctagtctttgtccaac
aataatactgattcgaacattttccattctgtcttggatttatgctcctgttaattgtgc
ctgatcgcaatgattccgggtggatggtactaagttgctttattacaggttttattatac
tcaatgctctcatttgtaacttgcctaaagtgcttctggatttaagtataattaaattga
gaaatgttcagaaatgactactgctgcagttcttgtgttttaactatatggggaaatatg
atccctttatgcatgcaccctaaacccataaagtaaatgtagtgtggcataatactttta
tttgtgttatttctagaccttgtccatacagggaagactgttaagtttaaaaccccactg
agatattaatgattaaataattttcaccatcgatttgattttcttaaatatttagcagtt
atacttactaaaggttaactgttgcagcaatgggaaaaaattgaaaacaacctttttctt
gacccaaattcctttgaaagaatttttttcttaaaagatgggggagggagagggaaaaac
agcaactgggtttccttgtttttgtttaatcttttagttagtttctcctactgaccaatt
ttgccacaaagagtgagtatacaggtgttaagaattcaccttgaaatttttgcaaagtag
agcaattctcattcacagtagttccaaaagcttgcaacattattttgcaattcaaatatt
ttcaaagaacaagcaaggaaaagattcagagtgctttgggaaagggaactaaaataatca
taactcccagttcatgtttaaattgctcttatataaattagtgctcctctcacttccaaa
aaaatgcactgttaagtatcagtttctaaaaacatgtaagtatgaacacacatatacaga
catacagtgctcactaaaccttatactggatcaagtgcccactttcctgccttccatgca
agggctgctaaacataaccaacaaatttcagtgactaactgggccaaatgagagatgtaa
taaattttctattttcctacggaacttaaataatgttttaaattcaccaagcaaggaggt
aagttcatctgaccattttccttacaatctaatgtagtaatcattaaactgtcaacggac
atactgctgcaatatttgatgcagtaatttgaaatagcattttagtaaaaatcacatcca
gatacatttcctctccaaagaaaagcagctttaacagaagcctttacagctttaataaaa
ttattggcttgctctaattccatttcaggagggttgtgaggaaaccataaatatatagaa
ttgaagcagaggtactggtttaagtttaattccagaaagtattttcaaattatcaatagc
ctggtttgcattgtaaatagtaaatgtgctaatgccatgcttatttagaaatcattttaa
actgcatttattgataactaaattagaactcaaataatgtattacccaatagtctcgaaa
catttaatttaatatggagtgtagcaggttctgataggcgttgggaacctagctaatgat
ttatgaggtcaccacttagcacccctagtaagaagaaggctgcattttaatgtccctctg
cttggatttgctacttagtttttctttaatcaggatagggtgtacacataacttttaggt
ttcacttgtgcttataaaatccggttaaaatgatcttagtgtgtcttttacacttccttt
tacattttgaggacatttaatgagctcttttggttgcatttaacatcattcccaggacag
ggagaaatctccacgccagactcagcgatggaagtagatcttttagcaattgagacagtt
tactgtcgtcgagaggaagatattgttaatggtgacattcgtctgatttatctgtgttgg
tggaaatggtaatgcaggcattgtttgagggagctccagaaaccattgttctggggtaga
actcgcaactactttgtgtggttcctcaaaacgtccctcactctccgcctccgaataaaa
tgtttttataaggaAATACTAGGGAGAACCCGGG
Primer
(+)agcggcttctgactttagc
(+)cccgggttctccctagtatt


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